Advantages are that you keep the history (good for auditing) and you don't have to worry about cascading a delete through various other tables in the database that reference the row you are deleting. Disadvantage is that you have to code any reporting/display methods to take the flag into account.
As far as if it is a common practice - I would say yes, but as with anything whether you use it depends on your business needs.
EDIT: Thought of another disadvantange - If you have unique indexes on the table, deleted records will still take up the "one" record, so you have to code around that possibility too (for example, a User table that has a unique index on username; A deleted record would still block the deleted users username for new records. Working around this you could tack on a GUID to the deleted username column, but it's a very hacky workaround that I wouldn't recommend. Probably in that circumstance it would be better to just have a rule that once a username is used, it can never be replaced.)
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